Chemical Senses Advance Access published online on June 14, 2007
Chemical Senses, doi:10.1093/chemse/bjm038
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A Quantitative StructureActivity Analysis on the Relative Sensitivity of the Olfactory and the Nasal Trigeminal Chemosensory Systems
1 Department of Chemistry, University College London, 20 Gordon Street, London WC1H OAJ, UK 2 Chemosensory Perception Laboratory, Department of Surgery (Otolaryngology), University of California, San Diego, La Jolla, CA 92093-0957, USA
Correspondence to be sent to: Michael H. Abraham, Department of Chemistry, University College London, 20 Gordon Street, London WC1H OAJ, UK. e-mail: m.h.abraham{at}ucl.ac.uk
| Abstract |
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We have applied a quantitative structureactivity relationship (QSAR) approach to analyze the chemical parameters that determine the relative sensitivity of olfaction and nasal chemesthesis to a common set of volatile organic compounds (VOCs). We used previously reported data on odor detection thresholds (ODTs) and nasal pungency thresholds (NPTs) from 64 VOCs belonging to 7 chemical series (acetate esters, carboxylic acids, alcohols, aliphatic aldehydes, alkylbenzenes, ketones, and terpenes). The analysis tested whether NPTs could be used to separate out "selective" chemosensory effects (i.e., those resting on the transfer of VOCs from the gas phase to the receptor phase) from "specific" chemosensory effects in ODTs. Previous work showed that selective effects overwhelmingly dominate chemesthetic potency whereas both selective and specific effects control olfactory potency. We conclude that it is indeed possible to use NPTs to separate out selective from specific effects in ODTs. Among the series studied, aldehydes and acids, except for formic acid, show clear specific effects in their olfactory potency. Furthermore, for VOCs whose odor potency rests mainly on selective effects, we have developed a QSAR equation that can predict their ODTs based on their NPTs.
Key words: chemesthetic QSAR, mechanism of biological activity, nasal chemosensory sensitivity, nasal irritation thresholds, odor detection thresholds, olfactory QSAR, VOCs
| Introduction |
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Humans rely principally on 2 chemosensory systems to detect airborne chemicals: olfaction and chemesthesis. The sense of smell is restricted to the nasal cavity and mediated by the olfactory nerve. In contrast, chemesthesis (Bryant and Silver 2000
Odorants reaching the lumen above the olfactory epithelium transfer from the gas phase into the mucus phase and they continue to be distributed among the various biophases until they reach the olfactory receptors (ORs) (Rawson and Yee 2006
) in the membrane of the cilia of olfactory sensory neurons (Schwarzenbacher et al. 2005
; Flannery et al. 2006
). ORs belong to the large family of G-proteincoupled receptors (Breer 2003
; Liman 2006
). In humans, there are about 388 genes coding for functional ORs and about 414 pseudogenes that do not code for functional ORs (Niimura and Nei 2006
). Each odorant is believed to activate a specific pattern of ORs (Malnic et al. 1999
).
Irritants entering the nasal cavity also transfer from the gas phase into the mucus and other biophases until they reach chemesthetic receptors in free nerve endings of the trigeminal nerve (Finger et al. 1990
), particularly from C and Adelta fibers. Trigeminal chemoreceptors include vanilloid (Tominaga M and Tominaga T 2005; Silver et al. 2006
), nicotinic acetylcholine (Thuerauf et al. 1999, 2006![]()
; Alimohammadi and Silver 2000
), and menthol (Kobayashi et al. 2005
; Damann et al. 2006
) receptors. Capsaicin, menthol, and a variety of pungent compounds stimulate sensory nerve fibers via activation of members of a family of transient receptor potential channels (Trevisani et al. 2002
; Jordt et al. 2004
; Macpherson et al. 2005, 2006![]()
) that includes about 30 members (Montell 2005
; Ramsey et al. 2006
). These and other receptors and mechanisms (Inoue and Bryant 2005
), including cell damage by reactive VOCs and consequent release of nociception mediators (Sutherland et al. 2000
), could play a role in nasal chemesthesis as evoked by common VOCs, including alcohols, esters, ketones, alkylbenzenes, aldehydes, etc. (Cometto-Muñiz 2001).
In the main, VOCs that can evoke irritation can also evoke odor. A previous separate QSAR analysis on nasal pungency thresholds (NPTs) (Abraham et al. 1998
) and odor detection thresholds (ODTs) (Abraham et al. 2002
) revealed that "selective" processes (e.g., transfer driven effects in which small structural changes in the VOC evoke predictable, and rather small, changes in biological activity) overwhelmingly dominate chemesthetic detection, whereas both selective and "specific" processes (e.g., effects in which small structural changes in the VOC may evoke less predictable, and often large, changes in biological activity) control olfactory potency. To understand further the nature of the chemical factors that influence ODT values, we have explored here the possibility that NPT values could be used to estimate selective effects in ODTs, thus producing a tool to assess the weight of the remaining specific (VOC-receptor) effects. The topic opens the window to ponder why certain chemical families or particular compounds (and which ones) could have driven the need for a more specialized and sensitive chemoreception in humans. The present study involves data on 64 VOCs from various chemical series. The compounds are listed in our previous separate QSAR analysis of odor (Abraham et al. 2002
) and nasal pungency (Abraham et al. 1998
) thresholds. However, we give in Table 1 an updated list. In the next section, we describe the QSAR model and illustrate further the meaning of the terms selective and specific within the present context.
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| Materials and methods |
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Both odor and nasal pungency involve the transfer of a compound, for example, a VOC, from an air stream through a mucus layer into a receptor or receptor area. This environment is likely to be inhomogeneous, being partly a hydrophobic lipid-like area and partly a hydrophilic aqueous-like area. We have previously developed an equation, equation (1), that seems to be very satisfactory for the correlation and explanation of the transfer of VOCs from the gaseous phase to a large number of solvents or other condensed phases, including biophases (Abraham 1993
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| (1) |
When equation (1) was applied to NPTs, as log(1/NPT), a very good correlation that accounted for more than 95% of the total effect was obtained (Abraham et al. 1998
). This strongly suggests that the factors that influence NPTs are those that influence the transfer of VOCs from the gas phase to condensed phases, that is from the gas phase to the receptor phase, and that other effects are of secondary importance. However, when equation (1) was applied to ODTs, as log(1/ODT), a much poorer correlation was found (Abraham et al. 2002
). Only by excluding families of compounds such as the aldehydes and carboxylic acids or by assigning a special descriptor to these families could a satisfactory correlation be obtained. Structural effects in transfer-type processes are invariably selective, in that different VOCs are transported from the gas phase to condensed phases with different equilibrium constants that do not vary greatly with small changes in structure. The poor correlation observed for log(1/ODT) values suggests that they are partly influenced by transfer from the gas phase to the receptor phase and are partly influenced by some type of specific effects.
In order to obtain more information on the factors that influence ODT values, we now explore the possibility that NPT values could be used to estimate the selective factors, that is to separate out the selective transport-related effects and to leave only the specific effects. The present study involves data on 64 VOCs from various chemical series. The compounds are listed in our previous separate QSAR analysis of odor (Abraham et al. 2002
) and nasal pungency (Abraham et al. 1998
) thresholds.
| Results and discussion |
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ODTs and NPTs were correlated against Abraham's descriptors, using equation (1). The aim was to obtain a similar equation for both sets of data to make possible a comparison between them. To do so, compounds that were outliers in the equation for ODT, that is aldehydes and carboxylic acids, were left out in both cases. In addition, 4 compounds that were outliers in the ODT equation and which might act through specific effects were omitted, viz: propanone, methyl acetate, tert-butyl acetate, and 1-octanol. Only the Abraham descriptors from equation (1) were used, without including any extra descriptor, or indicator variable. The resulting equations are
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| (2) |
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| (3) |
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We then regressed the observed values of log(1/ODT) against Clog(1/NPT) for the VOCs that we suggest act by selective effects only and obtained equation (4).
![]() | (4) |
If the A descriptor is used as another independent variable, the regression improves slightly, as shown in equation (5).
![]() | (5) |
Both equations (4) and (5) reproduce the values of log(1/ODT) as well as does the full equation (2), for selectively acting VOCs. We can then use either equation as a "baseline" for selective effects and can identify compounds that yield ODTs through a combination of selective and specific effects. This is illustrated in Figure 1, where we plot log(1/ODT) values for the 50 VOCs used in equations (4) and (5), plus aldehydes and acids, against calculated values from equation (5). The 5 aldehydes are more potent than calculated by an average of 1.7 log units, and the acids (excluding formic acid) by an average of 3.0 log units. These are our estimates of the specific effect of the 2 series of VOCs. In our previous analysis of ODTs (Abraham et al. 2002
), we were able to accommodate aldehydes and acids into general equations by adding an indicator variable that increased the potency of these compounds by 1.6 or 2.0 log units, depending on the exact form of the equation; the increased potency was for an average for the aldehydes and acids taken together. The present results for aldehydes and acids taken separately is in line with our previous analysis, but, we suggest, affords a much better estimate of the specific effect on ODTs.
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We can be reasonably sure that the aldehydes and acids provoke ODT through extra specific as well as selective effects because we have data for several other series for which we can calculate deviations from equation (5). We give in Table 2 values of the average error (AE), the absolute average error (AAE), and the SD of the observed and calculated values for the various series. The key statistics are AE and AAE. The AE denotes deviation from equation (5), either in a positive or negative sense {AE = (calculated observed values)/N, where N is the number of data points}. If AE and AAE are compared, it is then possible to deduce whether a given value of AE is due to random deviations or systematic deviations from equation (5). For the first 4 series, the AE values are very small, so that there are no systematic deviations. The numerically larger AAE values then represent random deviations, as do the corresponding SD values. These range from 0.33 to 0.77 log units in accord with the SD value of 0.57 log units in equation (5). However, for the aldehydes and acids, AE is identical to AAEall the deviations are of the same sign and are then systematic and not random. The SD value for the aldehydes is 3.6 times the SD in equation (5) and for the acids is 6.3 times the SD, so that the deviations from equation (5) are very large indeed. It is these systematic, not random, deviations from equation (5) that lead us to conclude that aldehydes and acids exert effects on ODTs through a combination of specific and selective effects.
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We have used the term specific effects to describe the observation that aldehydes and acids are much more potent as regard ODTs than we calculate from our QSAR analysis. The nature of these specific effects is not obvious. They may be due to specific VOC-receptor interactions, but other possibilities exist. For example, it has been shown that odor-binding proteins (OBPs) have a high affinity for aldehydes and acids (Tcatchoff et al. 2006
For individual VOCs, the position is not that straightforward. Of the 4 outliers that we have identified for ODTs, 1-octanol (2.15 obs, 0.41 calc) and tert-butyl acetate (0.11 obs, 1.49 calc) are more potent than calculated through equation (5), but whether these effects are due, for example, to specific VOC-receptor interactions, rather than to error in either the ODT determinations or the descriptors is difficult to assess. Both methyl acetate (3.46 obs, 2.06 calc) and propanone (4.07 obs, 2.02 calc) are much less potent than calculated through equation (5); this cannot be due to any (extra) specific effect at all and suggests that there are some factors that still need to be accounted for.
Now that we have used Clog(1/NPT) values to determine the specific effect of aldehydes and acids on ODT values, we can revert to log(1/NPT) values themselves in order to obtain a correlation between observed ODT values and observed NPT values for compounds that exert their influence through selective effects.
![]() | (6) |
![]() | (7) |
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Finally, we can ask why we are able to use nasal pungency thresholds as a base line for selective effects in another biological end point altogether. Possible biological mechanisms of action of VOCs have been set out (Abraham et al. 1994
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| Conclusion |
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It is possible to separate out specific effects from selective effects in ODTs by the use of NPTs used as an indication of selective chemosensory effects. The main VOCs that show specific effects are the aldehydes and carboxylic acids, except for formic acid. Although this VOC appears "normal," it is possible that this is a fortuitous combination of more than one specific effect. There are other VOCs that appear also to exhibit some specific effects as regard odor thresholds, and we can identify these as follows: 1-octanol, methyl acetate, propanone, and tert-butyl acetate. Whether these VOCs really do exhibit some specific effects, or whether there is some possible experimental error is not clearthese 4 VOCs share no obvious common features. Equation (6) and particularly equation (7) represent excellent predictive methods for ODTs directly from observed nasal pungency detection thresholds. The correlation between NPT and ODT values for compounds that have only selective effects can be explained very satisfactorily by a 2-stage mechanism of biological activity.
| Funding |
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National Institute on Deafness and Other Communication Disorders, National Institutes of Health (R01 DC002741, R01 DC005003, and R01 DC05602).
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Accepted 20 April 2007
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and acids
. The regression line is for the selective compounds.




ODT.